I will provide live zoom training on molecular dynamics simulation

Are you looking to learn Molecular Dynamics (MD) simulation through clear, practical, and live Zoom-based training sessions?

I offer step-by-step guidance tailored for beginners, students, and researchers who want to master MD workflows using GROMACS.

Packages

Basic: Protein MD Simulation

Learn the complete workflow for simulating a protein in water.

Full GROMACS workflow

System setup: Protein in water, Box dimensions up to 10 × 10 × 10 nm

Essential analysis tools:

RMSD, RMSF, Radius of Gyration (Rg), Hydrogen Bonds

Standard: Protein-Ligand MD Simulation

Includes everything in Basic, plus:

Preparing and simulating a protein-ligand complex in water

Ligand topology generation workflow

Additional analysis relevant to binding studies

Premium: Advanced MD Simulation

Includes everything in Standard, plus:

Membrane protein MD simulation (membrane building + insertion)

Extra analysis options, such as:

Distance, SASA, Clustering, MSD, Contacts, Custom plots, etc.

Suitable for complex, publication-level projects

Important Information

Please share your protein PDB file or PDB ID before the session.

Custom pricing applies for very large or multimeric protein or complex analysis.